# biology/mummer - The NetBSD Packages Collection

System for aligning whole genome sequences

    Mummer is a system for aligning whole genome sequences. Using an efficient
    data structure called a suffix tree, the system is able rapidly to align
    sequences containing millions of nucleotides whether in complete or draft
    form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
    of contigs from a shotgun sequencing project with ease, and will align them to
    another set of contigs or a genome using the NUCmer program included with the
    system.

- Source version: `mummer-3.20nb10`
- Maintainer: pkgsrc-users AT NetBSD.org
- Website: https://mummer.sourceforge.net/
- License: none stated
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools devel/gmake pkgtools/cwrappers

## Runtime dependencies

lang/perl5

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | mummer-3.20nb10.tgz
NetBSD 10.0 | aarch64 | mummer-3.20nb10.tgz
NetBSD 10.0 | aarch64eb | mummer-3.20nb10.tgz
NetBSD 10.0 | alpha | mummer-3.20nb10.tgz
NetBSD 10.0 | alpha | mummer-3.20nb10.tgz
NetBSD 10.0 | earmv4 | mummer-3.20nb10.tgz
NetBSD 10.0 | earmv6hf | mummer-3.20nb10.tgz
NetBSD 10.0 | earmv6hf | mummer-3.20nb10.tgz
NetBSD 10.0 | earmv7hf | mummer-3.20nb10.tgz
NetBSD 10.0 | earmv7hf | mummer-3.20nb10.tgz
NetBSD 10.0 | i386 | mummer-3.20nb10.tgz
NetBSD 10.0 | i386 | mummer-3.20nb10.tgz
NetBSD 10.0 | m68k | mummer-3.20nb10.tgz
NetBSD 10.0 | m68k | mummer-3.20nb10.tgz
NetBSD 10.0 | powerpc | mummer-3.20nb10.tgz
NetBSD 10.0 | powerpc | mummer-3.20nb10.tgz
NetBSD 10.0 | powerpc | mummer-3.20nb10.tgz
NetBSD 10.0 | sh3el | mummer-3.20nb10.tgz
NetBSD 10.0 | sparc64 | mummer-3.20nb10.tgz
NetBSD 10.0 | sparc64 | mummer-3.20nb10.tgz
NetBSD 10.0 | x86_64 | mummer-3.20nb10.tgz
NetBSD 10.0 | x86_64 | mummer-3.20nb10.tgz
NetBSD 11.0 | aarch64 | mummer-3.20nb10.tgz
NetBSD 11.0 | aarch64eb | mummer-3.20nb10.tgz
NetBSD 11.0 | earmv6hf | mummer-3.20nb10.tgz
NetBSD 11.0 | earmv7hf | mummer-3.20nb10.tgz
NetBSD 11.0 | i386 | mummer-3.20nb10.tgz
NetBSD 11.0 | riscv64 | mummer-3.20nb10.tgz
NetBSD 11.0 | sh3el | mummer-3.20nb10.tgz
NetBSD 11.0 | x86_64 | mummer-3.20nb10.tgz
NetBSD 9.0 | aarch64 | mummer-3.20nb10.tgz
NetBSD 9.0 | aarch64 | mummer-3.20nb10.tgz
NetBSD 9.0 | earmv6hf | mummer-3.20nb10.tgz
NetBSD 9.0 | earmv6hf | mummer-3.20nb10.tgz
NetBSD 9.0 | earmv7hf | mummer-3.20nb10.tgz
NetBSD 9.0 | earmv7hf | mummer-3.20nb10.tgz
NetBSD 9.0 | i386 | mummer-3.20nb10.tgz
NetBSD 9.0 | i386 | mummer-3.20nb10.tgz
NetBSD 9.0 | m68k | mummer-3.20nb10.tgz
NetBSD 9.0 | powerpc | mummer-3.20nb10.tgz
NetBSD 9.0 | x86_64 | mummer-3.20nb10.tgz
NetBSD 9.0 | x86_64 | mummer-3.20nb10.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.